HL_4V85_041

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4V85|1|BA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V85_041 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0808

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

4V85|1|BA|C|305
4V85|1|BA|U|306
4V85|1|BA|G|307
4V85|1|BA|G|308
4V85|1|BA|A|309
4V85|1|BA|A|310
4V85|1|BA|A|311
4V85|1|BA|G|312

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BY

50S ribosomal protein L24 1