3D structure

PDB id
4V85 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAAACAAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V85_059 not in the Motif Atlas
Homologous match to HL_7A0S_027
Geometric discrepancy: 0.1834
The information below is about HL_7A0S_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_47171.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

4V85|1|BA|G|978
4V85|1|BA|A|979
4V85|1|BA|A|980
4V85|1|BA|A|981
4V85|1|BA|C|982
4V85|1|BA|A|983
4V85|1|BA|A|984
4V85|1|BA|C|985

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BU
50S ribosomal protein L20
Chain BV
50S ribosomal protein L21

Coloring options:


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