HL_4V85_106

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

4V85|1|AA|C|841, 4V85|1|AA|U|842, 4V85|1|AA|U|843, 4V85|1|AA|G|844, 4V85|1|AA|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V85_106 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3528

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V85|1|AA|C|839
4V85|1|AA|C|840
4V85|1|AA|C|841
4V85|1|AA|U|842
4V85|1|AA|U|843
4V85|1|AA|G|844
4V85|1|AA|A|845
4V85|1|AA|G|846
4V85|1|AA|G|847

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AR

30S ribosomal protein S18