HL_4V87_005

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUUUUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_005 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3764

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V87|1|AA|C|155
4V87|1|AA|U|161
4V87|1|AA|U|162
4V87|1|AA|U|163
4V87|1|AA|U|164
4V87|1|AA|U|165
4V87|1|AA|G|171

Current chains

Chain AA

RNA (2909-MER)

Nearby chains

Chain AZ

50S ribosomal protein L28