HL_4V87_013

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4V87|1|AA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_013 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0727

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V87|1|AA|G|382
4V87|1|AA|U|383
4V87|1|AA|U|384
4V87|1|AA|C|385
4V87|1|AA|G|386
4V87|1|AA|U|387
4V87|1|AA|G|388
4V87|1|AA|G|389
4V87|1|AA|A|390
4V87|1|AA|G|391
4V87|1|AA|C|392

Current chains

Chain AA

RNA (2909-MER)

Nearby chains

Chain AO

50S ribosomal protein L15

Chain AZ

50S ribosomal protein L28