3D structure

PDB id
4V87 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V87_020 not in the Motif Atlas
Homologous match to HL_7RQB_020
Geometric discrepancy: 0.108
The information below is about HL_7RQB_020
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

4V87|1|AA|G|629
4V87|1|AA|G|630
4V87|1|AA|A|631
4V87|1|AA|A|632
4V87|1|AA|A|633
4V87|1|AA|C|634

Current chains

Chain AA
RNA (2909-MER)

Nearby chains

Chain A8
50S ribosomal protein L35
Chain AO
50S ribosomal protein L15

Coloring options:


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