HL_4V87_025

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

4V87|1|AA|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_025 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1478

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4V87|1|AA|U|779
4V87|1|AA|G|780
4V87|1|AA|A|781
4V87|1|AA|A|782
4V87|1|AA|A|783
4V87|1|AA|A|784
4V87|1|AA|G|785

Current chains

Chain AA

RNA (2909-MER)

Nearby chains

Chain AD

50S ribosomal protein L2