HL_4V87_086

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_086 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1837

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4V87|1|BA|C|522
4V87|1|BA|A|523
4V87|1|BA|G|524
4V87|1|BA|C|525
4V87|1|BA|C|526
4V87|1|BA|G|527

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain B1

MRNA

Chain BO

30S RIBOSOMAL PROTEIN S12