HL_4V87_173

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_173 not in the Motif Atlas

Geometric match to HL_4ENC_002

Geometric discrepancy: 0.1946

The information below is about HL_4ENC_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V87|1|DA|C|544
4V87|1|DA|G|545
4V87|1|DA|C|546
4V87|1|DA|A|547
4V87|1|DA|A|548
4V87|1|DA|G|549

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain D2

50S ribosomal protein L21

Chain DM

50S ribosomal protein L13