HL_4V87_186

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

4V87|1|DA|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_186 not in the Motif Atlas

Geometric match to HL_4V9F_036

Geometric discrepancy: 0.3904

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V87|1|DA|U|1065
4V87|1|DA|U|1066
4V87|1|DA|A|1067
4V87|1|DA|G|1068
4V87|1|DA|A|1069
4V87|1|DA|A|1070
4V87|1|DA|G|1071
4V87|1|DA|C|1072
4V87|1|DA|A|1073

Current chains

Chain DA

RNA (2909-MER)

Nearby chains