HL_4V87_231

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGUACGG

Length

8 nucleotides

Bulged bases

4V87|1|AA|G|1534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V87_231 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3492

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V87|1|AA|C|1532
4V87|1|AA|C|1533
4V87|1|AA|G|1534
4V87|1|AA|U|1535
4V87|1|AA|A|1536
4V87|1|AA|C|1537
4V87|1|AA|G|1538
4V87|1|AA|G|1539

Current chains

Chain AA

RNA (2909-MER)

Nearby chains