HL_4V87_239
3D structure
- PDB id
- 4V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCUCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- 4V87|1|BD|C|35
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V87_239 not in the Motif Atlas
- Homologous match to HL_4WZD_209
- Geometric discrepancy: 0.3142
- The information below is about HL_4WZD_209
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V87|1|BD|G|31
4V87|1|BD|G|32
4V87|1|BD|C|33
4V87|1|BD|U|34
4V87|1|BD|C|35
4V87|1|BD|A|36
4V87|1|BD|U|37
4V87|1|BD|A|38
4V87|1|BD|A|39
4V87|1|BD|C|40
4V87|1|BD|C|41
Current chains
- Chain BD
- TRNA-FMET
Nearby chains
- Chain B1
- MRNA
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BC
- Transfer RNA; tRNA
- Chain BJ
- 30S RIBOSOMAL PROTEIN S7
- Chain BN
- 30S RIBOSOMAL PROTEIN S11
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