HL_4V88_023
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAAAUG
- Length
- 7 nucleotides
- Bulged bases
- 4V88|1|A1|U|1028
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V88_023 not in the Motif Atlas
- Homologous match to HL_5TBW_023
- Geometric discrepancy: 0.0944
- The information below is about HL_5TBW_023
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
4V88|1|A1|C|1023
4V88|1|A1|G|1024
4V88|1|A1|A|1025
4V88|1|A1|A|1026
4V88|1|A1|A|1027
4V88|1|A1|U|1028
4V88|1|A1|G|1029
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AP
- 40S ribosomal protein S15
- Chain Ah
- Suppressor protein STM1
- Chain BJ
- 60S ribosomal protein L11-A
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