HL_4V88_025

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

4V88|1|A1|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_025 not in the Motif Atlas

Homologous match to HL_5TBW_025

Geometric discrepancy: 0.0499

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V88|1|A1|G|1126
4V88|1|A1|G|1127
4V88|1|A1|U|1128
4V88|1|A1|A|1129
4V88|1|A1|A|1130
4V88|1|A1|G|1131
4V88|1|A1|C|1132

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10