HL_4V88_028

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_028 not in the Motif Atlas

Geometric match to HL_5TBW_028

Geometric discrepancy: 0.1109

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4V88|1|A1|G|1266
4V88|1|A1|U|1267
4V88|1|A1|G|1268
4V88|1|A1|U|1269
4V88|1|A1|A|1270
4V88|1|A1|A|1271
4V88|1|A1|C|1272
4V88|1|A1|A|1273
4V88|1|A1|A|1274
4V88|1|A1|C|1275

Current chains

Chain A1

25S rRNA

Nearby chains