HL_4V88_032

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

4V88|1|A1|G|1507, 4V88|1|A1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_032 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.0441

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V88|1|A1|A|1506
4V88|1|A1|G|1507
4V88|1|A1|C|1508
4V88|1|A1|A|1509
4V88|1|A1|G|1510
4V88|1|A1|U|1511
4V88|1|A1|U|1512

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BP

60S ribosomal protein L17-A

Chain BR

60S ribosomal protein L19-A

Chain Bl

60S ribosomal protein L39