HL_4V88_035

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

4V88|1|A1|U|1606, 4V88|1|A1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_035 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0524

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V88|1|A1|G|1599
4V88|1|A1|U|1600
4V88|1|A1|U|1601
4V88|1|A1|A|1602
4V88|1|A1|A|1603
4V88|1|A1|G|1604
4V88|1|A1|A|1605
4V88|1|A1|U|1606
4V88|1|A1|U|1607
4V88|1|A1|C|1608

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19-A

Chain BX

60S ribosomal protein L25

Chain Bg

60S ribosomal protein L34-A