HL_4V88_055

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V88|1|A1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_055 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.0484

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4V88|1|A1|C|2616
4V88|1|A1|U|2617
4V88|1|A1|G|2618
4V88|1|A1|G|2619
4V88|1|A1|G|2620
4V88|1|A1|G|2621
4V88|1|A1|C|2622
4V88|1|A1|G|2623
4V88|1|A1|G|2624

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain Bb

60S ribosomal protein L29