HL_4V88_057

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_057 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.0706

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V88|1|A1|A|2673
4V88|1|A1|A|2674
4V88|1|A1|C|2675
4V88|1|A1|A|2676
4V88|1|A1|G|2677
4V88|1|A1|A|2678
4V88|1|A1|A|2679
4V88|1|A1|A|2680
4V88|1|A1|U|2681

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ah

Suppressor protein STM1

Chain BJ

60S ribosomal protein L11-A