HL_4V88_060

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_060 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.0691

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V88|1|A1|U|2744
4V88|1|A1|G|2745
4V88|1|A1|A|2746
4V88|1|A1|A|2747
4V88|1|A1|A|2748
4V88|1|A1|G|2749

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein L5

Chain BT

60S ribosomal protein L21-A

Chain Bo

60S ribosomal protein L42-A