HL_4V88_064

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_064 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.0608

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V88|1|A1|U|2920
4V88|1|A1|U|2921
4V88|1|A1|G|2922
4V88|1|A1|U|2923
4V88|1|A1|U|2924
4V88|1|A1|C|2925
4V88|1|A1|A|2926

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3