HL_4V88_069

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

4V88|1|A1|U|3195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_069 not in the Motif Atlas

Homologous match to HL_5TBW_068

Geometric discrepancy: 0.1061

The information below is about HL_5TBW_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

4V88|1|A1|C|3194
4V88|1|A1|U|3195
4V88|1|A1|U|3196
4V88|1|A1|G|3197

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9-A

Chain BM

60S ribosomal protein L14-A