HL_4V88_071

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

4V88|1|A1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_071 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.0471

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

4V88|1|A1|G|3303
4V88|1|A1|U|3304
4V88|1|A1|A|3305
4V88|1|A1|U|3306
4V88|1|A1|A|3307
4V88|1|A1|C|3308
4V88|1|A1|G|3309
4V88|1|A1|A|3310
4V88|1|A1|C|3311

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BP

60S ribosomal protein L17-A