HL_4V88_083

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

4V88|1|A2|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_083 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1221

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V88|1|A2|C|414
4V88|1|A2|C|415
4V88|1|A2|A|416
4V88|1|A2|A|417
4V88|1|A2|G|418
4V88|1|A2|G|419

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AG

40S ribosomal protein S6-A

Chain AY

40S ribosomal protein S24-A

Chain BV

60S ribosomal protein L23-A