HL_4V88_088

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

4V88|1|A2|U|718, 4V88|1|A2|U|719, 4V88|1|A2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V88|1|A2|G|703
4V88|1|A2|C|704
4V88|1|A2|U|705
4V88|1|A2|A|706
4V88|1|A2|A|707
4V88|1|A2|C|708
4V88|1|A2|C|709
4V88|1|A2|U|710
4V88|1|A2|U|711
4V88|1|A2|G|712
4V88|1|A2|A|713
4V88|1|A2|G|714
4V88|1|A2|U|715
4V88|1|A2|C|716
4V88|1|A2|C|717
4V88|1|A2|U|718
4V88|1|A2|U|719
4V88|1|A2|G|720
4V88|1|A2|U|721
4V88|1|A2|G|722
4V88|1|A2|G|723
4V88|1|A2|C|724
4V88|1|A2|U|725
4V88|1|A2|C|726
4V88|1|A2|U|727
4V88|1|A2|U|728
4V88|1|A2|G|729
4V88|1|A2|G|730
4V88|1|A2|C|731
4V88|1|A2|G|732
4V88|1|A2|A|733
4V88|1|A2|A|734
4V88|1|A2|C|735

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A