HL_4V88_089

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

4V88|1|A2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_089 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.0762

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4V88|1|A2|U|764
4V88|1|A2|G|765
4V88|1|A2|U|766
4V88|1|A2|U|767
4V88|1|A2|C|768
4V88|1|A2|A|769
4V88|1|A2|A|770
4V88|1|A2|A|771
4V88|1|A2|G|772

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AJ

40S ribosomal protein S9-A

Chain AY

40S ribosomal protein S24-A