HL_4V88_109

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_109 not in the Motif Atlas

Geometric match to HL_5TBW_185

Geometric discrepancy: 0.09

The information below is about HL_5TBW_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83767.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

4V88|1|A3|C|36
4V88|1|A3|G|37
4V88|1|A3|U|38
4V88|1|A3|C|39
4V88|1|A3|C|40
4V88|1|A3|G|41

Current chains

Chain A3

5S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain Ah

Suppressor protein STM1

Chain BD

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L11-A