HL_4V88_111

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_111 not in the Motif Atlas

Geometric match to HL_5TBW_074

Geometric discrepancy: 0.0786

The information below is about HL_5TBW_074

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V88|1|A4|U|73
4V88|1|A4|U|74
4V88|1|A4|G|75
4V88|1|A4|C|76
4V88|1|A4|A|77
4V88|1|A4|G|78

Current chains

Chain A4

5.8S rRNA

Nearby chains

Chain BY

60S ribosomal protein L26-A

Chain Bh

60S ribosomal protein L35-A

Chain Bl

60S ribosomal protein L39