HL_4V88_122

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAAUUCC

Length

10 nucleotides

Bulged bases

4V88|1|A5|G|304, 4V88|1|A5|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41542.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

30

Unit IDs

4V88|1|A5|G|303
4V88|1|A5|G|304
4V88|1|A5|U|305
4V88|1|A5|A|306
4V88|1|A5|A|307
4V88|1|A5|A|308
4V88|1|A5|U|309
4V88|1|A5|U|310
4V88|1|A5|C|311
4V88|1|A5|C|312

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DN

60S ribosomal protein L15-A

Chain Da

60S ribosomal protein L28

Chain Di

60S ribosomal protein L36-A

Chain Do

60S ribosomal protein L42-A