HL_4V88_133

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

4V88|1|A5|U|879, 4V88|1|A5|A|883, 4V88|1|A5|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56547.1

Basepair signature

cWW-R-tSW-cSS-R

Number of instances in this motif group

2

Unit IDs

4V88|1|A5|A|876
4V88|1|A5|C|877
4V88|1|A5|G|878
4V88|1|A5|U|879
4V88|1|A5|G|880
4V88|1|A5|C|881
4V88|1|A5|A|882
4V88|1|A5|A|883
4V88|1|A5|A|884
4V88|1|A5|U|885

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DB

60S ribosomal protein L3

Chain DP

60S ribosomal protein L17-A

Chain Dj

60S ribosomal protein L37-A