HL_4V88_139

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89583.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

14

Unit IDs

4V88|1|A5|G|1148
4V88|1|A5|G|1149
4V88|1|A5|A|1150
4V88|1|A5|U|1151
4V88|1|A5|G|1152
4V88|1|A5|A|1153
4V88|1|A5|A|1154
4V88|1|A5|C|1155

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain DF

60S ribosomal protein L7-A

Chain De

60S ribosomal protein L32

Chain Df

60S ribosomal protein L33-A