HL_4V88_144

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73671.1

Basepair signature

cWW-R-R-tWH-R-R-R

Number of instances in this motif group

117

Unit IDs

4V88|1|A5|A|1462
4V88|1|A5|U|1463
4V88|1|A5|G|1464
4V88|1|A5|A|1465
4V88|1|A5|G|1466
4V88|1|A5|A|1467
4V88|1|A5|A|1468
4V88|1|A5|C|1469
4V88|1|A5|U|1470

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DP

60S ribosomal protein L17-A

Chain DR

60S ribosomal protein L19-A

Chain Dd

60S ribosomal protein L31-A