HL_4V88_147

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUGAUUUUAUGCAGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_18595.1

Basepair signature

cWW-L-R-R-cWW-R-cWW-cWW-R-R-R

Number of instances in this motif group

1

Unit IDs

4V88|1|A5|C|1562
4V88|1|A5|C|1563
4V88|1|A5|U|1564
4V88|1|A5|G|1565
4V88|1|A5|A|1566
4V88|1|A5|U|1567
4V88|1|A5|U|1568
4V88|1|A5|U|1569
4V88|1|A5|U|1570
4V88|1|A5|A|1571
4V88|1|A5|U|1572
4V88|1|A5|G|1573
4V88|1|A5|C|1574
4V88|1|A5|A|1575
4V88|1|A5|G|1576
4V88|1|A5|G|1577

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain DG

60S ribosomal protein L8-A

Chain DX

60S ribosomal protein L25