HL_4V88_164

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

4V88|1|A5|A|2372, 4V88|1|A5|A|2373, 4V88|1|A5|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90168.1

Basepair signature

cWW-R-R-tWH-R

Number of instances in this motif group

14

Unit IDs

4V88|1|A5|G|2369
4V88|1|A5|G|2370
4V88|1|A5|G|2371
4V88|1|A5|A|2372
4V88|1|A5|A|2373
4V88|1|A5|C|2374
4V88|1|A5|G|2375
4V88|1|A5|G|2376
4V88|1|A5|G|2377
4V88|1|A5|C|2378

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DB

60S ribosomal protein L3

Chain De

60S ribosomal protein L32