HL_4V88_166
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAAUUCAUUUUC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07245.1
- Basepair signature
- cWW-R-R-R-R-cSS-R-R-R
- Number of instances in this motif group
- 1
Unit IDs
4V88|1|A5|G|2534
4V88|1|A5|A|2535
4V88|1|A5|A|2536
4V88|1|A5|U|2537
4V88|1|A5|U|2538
4V88|1|A5|C|2539
4V88|1|A5|A|2540
4V88|1|A5|U|2541
4V88|1|A5|U|2542
4V88|1|A5|U|2543
4V88|1|A5|U|2544
4V88|1|A5|C|2545
Current chains
- Chain A5
- 25S rRNA
Nearby chains
- Chain CB
- 40S ribosomal protein S1-A
- Chain DG
- 60S ribosomal protein L8-A
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