HL_4V88_171

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41542.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

30

Unit IDs

4V88|1|A5|C|2693
4V88|1|A5|A|2694
4V88|1|A5|A|2695
4V88|1|A5|A|2696
4V88|1|A5|A|2697
4V88|1|A5|G|2698
4V88|1|A5|G|2699
4V88|1|A5|G|2700

Current chains

Chain A5

25S rRNA

Nearby chains

Chain Ch

Suppressor protein STM1

Chain DI

60S ribosomal protein L10

Chain DT

60S ribosomal protein L21-A

Chain Do

60S ribosomal protein L42-A