3D structure

PDB id
4V88 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUAAUUC
Length
7 nucleotides
Bulged bases
4V88|1|A6|U|158, 4V88|1|A6|U|159
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Other HL
Broad Annotation
Other HL
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

4V88|1|A6|G|154
4V88|1|A6|U|155
4V88|1|A6|A|156
4V88|1|A6|A|157
4V88|1|A6|U|158
4V88|1|A6|U|159
4V88|1|A6|C|160

Current chains

Chain A6
18S rRNA

Nearby chains

Chain CG
40S ribosomal protein S6-A
Chain CY
40S ribosomal protein S24-A

Coloring options:

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