HL_4V88_194

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases (A, C, G, U)

369A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V88|1|A6|U|368
4V88|1|A6|A|369
4V88|1|A6|A|370
4V88|1|A6|G|371
4V88|1|A6|G|372
4V88|1|A6|G|373

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain CJ

40S ribosomal protein S9-A

Chain CL

40S ribosomal protein S11-A

Chain CW

40S ribosomal protein S22-A

Chain CX

40S ribosomal protein S23-A