3D structure

PDB id
4V88 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UAAGGG
Length
6 nucleotides
Bulged bases (A, C, G, U)
369A
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50142.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

4V88|1|A6|U|368
4V88|1|A6|A|369
4V88|1|A6|A|370
4V88|1|A6|G|371
4V88|1|A6|G|372
4V88|1|A6|G|373

Current chains

Chain A6
18S rRNA

Nearby chains

Chain CC
40S ribosomal protein S2
Chain CJ
40S ribosomal protein S9-A
Chain CL
40S ribosomal protein S11-A
Chain CW
40S ribosomal protein S22-A
Chain CX
40S ribosomal protein S23-A

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 1.1265 s