HL_4V88_195

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases (A, C, G, U)

403G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84288.1

Basepair signature

cWW-tWH-tWH-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V88|1|A6|C|393
4V88|1|A6|C|394
4V88|1|A6|U|395
4V88|1|A6|G|396
4V88|1|A6|A|397
4V88|1|A6|G|398
4V88|1|A6|A|399
4V88|1|A6|A|400
4V88|1|A6|A|401
4V88|1|A6|C|402
4V88|1|A6|G|403
4V88|1|A6|G|404

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CE

40S ribosomal protein S4-A

Chain CG

40S ribosomal protein S6-A

Chain CI

40S ribosomal protein S8-A

Chain CY

40S ribosomal protein S24-A