HL_4V88_200

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_53845.3

Basepair signature

cWW-tSH

Number of instances in this motif group

9

Unit IDs

4V88|1|A6|C|569
4V88|1|A6|A|570
4V88|1|A6|G|571
4V88|1|A6|C|572
4V88|1|A6|C|573
4V88|1|A6|G|574

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CX

40S ribosomal protein S23-A