HL_4V88_206

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12326.2

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

10

Unit IDs

4V88|1|A6|A|900
4V88|1|A6|G|901
4V88|1|A6|G|902
4V88|1|A6|U|903
4V88|1|A6|G|904
4V88|1|A6|A|905
4V88|1|A6|A|906
4V88|1|A6|A|907
4V88|1|A6|U|908
4V88|1|A6|U|909

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CF

40S ribosomal protein S5

Chain CO

40S ribosomal protein S14-A

Chain Ca

40S ribosomal protein S26-A