HL_4V88_208

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases (A, C, G, U)

1004U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12326.2

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

10

Unit IDs

4V88|1|A6|G|997
4V88|1|A6|A|998
4V88|1|A6|U|999
4V88|1|A6|C|1000
4V88|1|A6|A|1001
4V88|1|A6|G|1002
4V88|1|A6|A|1003
4V88|1|A6|U|1004
4V88|1|A6|A|1005
4V88|1|A6|C|1006
4V88|1|A6|C|1007

Current chains

Chain A6

18S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CO

40S ribosomal protein S14-A

Chain Ca

40S ribosomal protein S26-A