3D structure

PDB id
4V88 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AGAAAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Other HL
Broad Annotation
Other HL
Motif group
HL_85603.1
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
304

Unit IDs

4V88|1|A6|A|1084
4V88|1|A6|G|1085
4V88|1|A6|A|1086
4V88|1|A6|A|1087
4V88|1|A6|A|1088
4V88|1|A6|U|1089

Current chains

Chain A6
18S rRNA

Nearby chains

Chain CC
40S ribosomal protein S2
Chain CW
40S ribosomal protein S22-A
Chain Ca
40S ribosomal protein S26-A

Coloring options:

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