HL_4V88_210

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

4V88|1|A6|A|1084
4V88|1|A6|G|1085
4V88|1|A6|A|1086
4V88|1|A6|A|1087
4V88|1|A6|A|1088
4V88|1|A6|U|1089

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S2

Chain CW

40S ribosomal protein S22-A

Chain Ca

40S ribosomal protein S26-A