HL_4V88_218

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

4V88|1|A6|C|1501
4V88|1|A6|G|1502
4V88|1|A6|A|1503
4V88|1|A6|G|1504
4V88|1|A6|A|1505
4V88|1|A6|G|1506

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CS

40S ribosomal protein S18-A

Chain CT

40S ribosomal protein S19-A