3D structure

PDB id
4V88 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

4V88|1|A6|G|1778
4V88|1|A6|U|1779
4V88|1|A6|G|1780
4V88|1|A6|A|1781
4V88|1|A6|A|1782
4V88|1|A6|C|1783

Current chains

Chain A6
18S rRNA

Nearby chains

Chain A5
Large subunit ribosomal RNA; LSU rRNA
Chain Dn
60S ribosomal protein L41-A

Coloring options:

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