HL_4V88_237
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V88_237 not in the Motif Atlas
- Homologous match to HL_8P9A_183
- Geometric discrepancy: 0.0852
- The information below is about HL_8P9A_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13971.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A3|U|32
4V88|1|A3|U|33
4V88|1|A3|C|34
4V88|1|A3|C|35
4V88|1|A3|C|36
4V88|1|A3|G|37
4V88|1|A3|U|38
4V88|1|A3|C|39
4V88|1|A3|C|40
4V88|1|A3|G|41
4V88|1|A3|A|42
4V88|1|A3|U|43
4V88|1|A3|C|44
4V88|1|A3|A|45
Current chains
- Chain A3
- 5S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ah
- Suppressor protein STM1
- Chain BD
- 60S ribosomal protein L5
- Chain BJ
- 60S ribosomal protein L11-A
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