HL_4V88_244
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V88_244 not in the Motif Atlas
- Homologous match to HL_8P9A_186
- Geometric discrepancy: 0.0531
- The information below is about HL_8P9A_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V88|1|A8|C|47
4V88|1|A8|A|48
4V88|1|A8|G|49
4V88|1|A8|C|50
4V88|1|A8|G|51
4V88|1|A8|A|52
4V88|1|A8|A|53
4V88|1|A8|A|54
4V88|1|A8|U|55
4V88|1|A8|G|56
Current chains
- Chain A8
- 5.8S rRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain DX
- 60S ribosomal protein L25
- Chain Dh
- 60S ribosomal protein L35-A
- Chain Dj
- 60S ribosomal protein L37-A
- Chain Dl
- 60S ribosomal protein L39
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