HL_4V88_245

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

4V88|1|A1|U|545, 4V88|1|A1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_245 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.3812

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V88|1|A1|G|542
4V88|1|A1|C|543
4V88|1|A1|C|544
4V88|1|A1|U|545
4V88|1|A1|C|546
4V88|1|A1|G|547
4V88|1|A1|G|548
4V88|1|A1|U|549

Current chains

Chain A1

25S rRNA

Nearby chains