HL_4V89_008

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V89_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.084

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V89|1|AA|A|320
4V89|1|AA|A|321
4V89|1|AA|C|322
4V89|1|AA|U|323
4V89|1|AA|G|324
4V89|1|AA|A|325
4V89|1|AA|G|326
4V89|1|AA|A|327
4V89|1|AA|C|328
4V89|1|AA|A|329
4V89|1|AA|C|330
4V89|1|AA|G|331
4V89|1|AA|G|332
4V89|1|AA|U|333

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20