HL_4V89_012

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

4V89|1|AA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V89_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2452

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V89|1|AA|G|462
4V89|1|AA|U|463
4V89|1|AA|U|464
4V89|1|AA|A|465
4V89|1|AA|A|466
4V89|1|AA|U|467
4V89|1|AA|A|468
4V89|1|AA|C|469
4V89|1|AA|C|470

Current chains

Chain AA

16S rRNA

Nearby chains